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Colorectal cancer

Disease information

Colorectal cancer (CRC) typically starts as a benign tumor, often in the form of a polyp, which over time becomes cancerous. Globally, CRC is the third most common type of cancer, making up about 10% of all cases. Most CRCs are due to old age and lifestyle factors, as well as to cancer family history. The main risk factors include diet, obesity, smoking, alcohol, lack of physical activity, inflammatory bowel disease, adenomatous polyposis, and hereditary non-polyposis colon cancer.

Treatments may include surgery, radiotherapy, chemotherapy, and targeted therapy. The five-year survival rate in the United States is around 65%. Accumulative evidence has demonstrated that mucosa-associated bacteria harbor pro-tumoral properties, supporting an active role of bacteria as pathobionts. Some of the most relevant protumoral pathobionts are Escherichia coli, Fusobacterium nucleatum, and Bacteroides fragilis.

Demographics

Total samples: 534
Females: 196
Males: 333
Age: 63.9 (28-90)
BMI: 24.5 (13.3-40.0)

Species association

Enriched in 225 species
Depleted in 38 species

Cohorts

hgma11 - CRC - United States of America

hgma399 - CRC - France

hgma412 - CRC - Austria

hgma413 - CRC - China

hgma414 - CRC - India

hgma415 - CRC - United Kingdom

hgma44 - CRC - United Kingdom

hgma45 - CRC - Japan

hgma46 - CRC - Italy

Bioprojects included

PRJDB4176 - 10.1038/s41591-019-0458-7

PRJEB10878 - 10.1136/gutjnl-2015-309800

PRJEB12449 - 10.1371/journal.pone.0155362

PRJEB27928 - 10.1038/s41591-019-0406-6

PRJEB6070 - 10.15252/msb.20145645

PRJEB7774 - 10.1038/ncomms7528

PRJNA447983 - 10.1038/s41591-019-0405-7

PRJNA531273 - 10.1128/mSystems.00438-19

Relative abundance

Phylum
Family
Genus

Richness overview

Gene

Species

Richness overview (per cohort)

Gene

Species