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Escherichia coli

Taxonomy

Image of organism in genus Escherichia coli
Species:Escherichia coli
Genus:Escherichia
Family:Enterobacteriaceae
Order:Enterobacterales
Class:Gammaproteobacteria
Phylum:Proteobacteria

 

Gut inflow:0.437
Gut outflow:0.379
Disease Association:

Ankylosing spondylitis (ES=0.310262)

Atherosclerosis (ES=0.301437)

Colorectal cancer (ES=0.319117)

Colorectal cancer (ES=0.33148)

Crohn's disease (ES=0.316171)

NAFLD (ES=1)

Type 1 diabetes (ES=0.667388)

Type 1 diabetes (ES=0.349634)

Type 2 diabetes (ES=0.460432)

Region Enrichment:India, Madagascar

Phenotypes

ShapeRod-shaped; Pleomorphic-shaped
Gram stainingGram-; Gram+
MotilityMotile; Chemotactic; Nonmotile
Oxygen RequirementFacultative; Anaerobe; Aerobe
SporulationNonsporulating; Sporulating
EcosystemUnclassified; Human; Birds; Animal; Mammals; Plants; Terrestrial; Aquatic; Wastewater; Vertebrates
Ecosystem TypeUnclassified; Excretory system; Nervous system; Skin; Genetically modified; Respiratory system; Soil; Reproductive system; Marine; Milk; Circulatory system; Tissue; Meat products; Nematoda; Digestive system

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00010 - Glycolysis / Gluconeogenesis

ko00020 - Citrate cycle (TCA cycle)

ko00030 - Pentose phosphate pathway

ko00040 - Pentose and glucuronate interconversions

ko00051 - Fructose and mannose metabolism

ko00052 - Galactose metabolism

ko00053 - Ascorbate and aldarate metabolism

ko00061 - Fatty acid biosynthesis

ko00071 - Fatty acid degradation

ko00130 - Ubiquinone and other terpenoid-quinone biosynthesis

ko00230 - Purine metabolism

ko00240 - Pyrimidine metabolism

ko00250 - Alanine, aspartate and glutamate metabolism

ko00260 - Glycine, serine and threonine metabolism

ko00270 - Cysteine and methionine metabolism

ko00281 - Geraniol degradation

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00330 - Arginine and proline metabolism

ko00340 - Histidine metabolism

ko00350 - Tyrosine metabolism

ko00360 - Phenylalanine metabolism

ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis

ko00410 - beta-Alanine metabolism

ko00430 - Taurine and hypotaurine metabolism

ko00440 - Phosphonate and phosphinate metabolism

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00480 - Glutathione metabolism

ko00500 - Starch and sucrose metabolism

ko00511 - Other glycan degradation

ko00520 - Amino sugar and nucleotide sugar metabolism

ko00521 - Streptomycin biosynthesis

ko00540 - Lipopolysaccharide biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00564 - Glycerophospholipid metabolism

ko00620 - Pyruvate metabolism

ko00630 - Glyoxylate and dicarboxylate metabolism

ko00633 - Nitrotoluene degradation

ko00640 - Propanoate metabolism

ko00650 - Butanoate metabolism

ko00660 - C5-Branched dibasic acid metabolism

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00720 - Carbon fixation pathways in prokaryotes

ko00730 - Thiamine metabolism

ko00740 - Riboflavin metabolism

ko00750 - Vitamin B6 metabolism

ko00760 - Nicotinate and nicotinamide metabolism

ko00770 - Pantothenate and CoA biosynthesis

ko00780 - Biotin metabolism

ko00785 - Lipoic acid metabolism

ko00790 - Folate biosynthesis

ko00900 - Terpenoid backbone biosynthesis

ko00903 - Limonene and pinene degradation

ko00910 - Nitrogen metabolism

ko00920 - Sulfur metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko01040 - Biosynthesis of unsaturated fatty acids

ko01053 - Biosynthesis of siderophore group nonribosomal peptides

ko01110 - Biosynthesis of secondary metabolites

ko01120 - Microbial metabolism in diverse environments

ko01130 - Biosynthesis of antibiotics

ko02010 - ABC transporters

ko02020 - Two-component system

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko02060 - Phosphotransferase system (PTS)

ko03010 - Ribosome

ko03018 - RNA degradation

ko03030 - DNA replication

ko03060 - Protein export

ko03070 - Bacterial secretion system

ko03410 - Base excision repair

ko03430 - Mismatch repair

ko03440 - Homologous recombination

ko05111 - Biofilm formation - Vibrio cholerae

Show all

KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00003 - Gluconeogenesis, oxaloacetate => fructose-6P

M00004 - Pentose phosphate pathway (Pentose phosphate cycle)

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00006 - Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00008 - Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate

M00009 - Citrate cycle (TCA cycle, Krebs cycle)

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00011 - Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate

M00012 - Glyoxylate cycle

M00015 - Proline biosynthesis, glutamate => proline

M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

M00017 - Methionine biosynthesis, apartate => homoserine => methionine

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00022 - Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate

M00027 - GABA (gamma-Aminobutyrate) shunt

M00046 - Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate

M00048 - Inosine monophosphate biosynthesis, PRPP + glutamine => IMP

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00051 - Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP

M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A

M00061 - D-Glucuronate degradation

M00063 - CMP-KDO biosynthesis

M00064 - ADP-L-glycero-D-manno-heptose biosynthesis

M00086 - beta-Oxidation, acyl-CoA synthesis

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00115 - NAD biosynthesis, aspartate => NAD

M00116 - Menaquinone biosynthesis, chorismate => menaquinol

M00117 - Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone

M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate

M00121 - Heme biosynthesis, glutamate => heme

M00122 - Cobalamin biosynthesis, cobinamide => cobalamin

M00123 - Biotin biosynthesis, pimeloyl-ACP/CoA => biotin

M00124 - Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00133 - Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine

M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine

M00136 - GABA biosynthesis, prokaryotes, putrescine => GABA

M00144 - NADH

M00149 - Succinate dehydrogenase, prokaryotes

M00150 - Fumarate reductase, prokaryotes

M00153 - Cytochrome bd ubiquinol oxidase

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00165 - Reductive pentose phosphate cycle (Calvin cycle)

M00167 - Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P

M00176 - Assimilatory sulfate reduction, sulfate => H2S

M00308 - Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P

M00345 - Formaldehyde assimilation, ribulose monophosphate pathway

M00364 - C10-C20 isoprenoid biosynthesis, bacteria

M00365 - C10-C20 isoprenoid biosynthesis, archaea

M00417 - Cytochrome o ubiquinol oxidase

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00530 - Dissimilatory nitrate reduction, nitrate => ammonia

M00533 - Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00545 - Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA

M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose

M00550 - Ascorbate degradation, ascorbate => D-xylulose-5P

M00552 - D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00555 - Betaine biosynthesis, choline => betaine

M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP

M00573 - Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin

M00575 - Pertussis pathogenicity signature, T1SS

M00577 - Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00580 - Pentose phosphate pathway, archaea, fructose 6P => ribose 5P

M00631 - D-Galacturonate degradation (bacteria)

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00696 - Multidrug resistance, efflux pump AcrEF-TolC

M00697 - Multidrug resistance, efflux pump MdtEF-TolC

M00698 - Multidrug resistance, efflux pump BpeEF-OprC

M00705 - Multidrug resistance, efflux pump MepA

M00718 - Multidrug resistance, efflux pump MexAB-OprM

M00745 - Imipenem resistance, repression of porin OprD

M00746 - Multidrug resistance, repression of porin OmpF

M00761 - Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N

M00793 - dTDP-L-rhamnose biosynthesis

M00843 - L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4

M00844 - Arginine biosynthesis, ornithine => arginine

M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine

Show all

Antibiotic resistance

blac

dfrA

erm

fos

sul

tetM

tetX

van

Virulence factor class

Actin-based motility

Adherence

Adhesion

Biofilm

Capsule

Cell motility

Cell surface and membrane proteins

Cell-to-cell spread

Cellular metabolism

Chaperone

Cytotoxin

Drug efflux system

Escape from the phagosome

Fimbriae

Heme uptake

Inhibition of phagolysosome formation

Intracellular survival and replication

Invasion

Iron uptake

Lps (lipopolysaccharide)

Modulate host immune response

Protease

Quorum sensing system

Regulation of gene expression

Secretion

Serum resistance

Stress

Two-component system

Virulence

Zinc uptake

Show all

Virulence factor gene

[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) (ID:STM474_0645)

16 kDa heat shock protein A (ID:SL1344_3776)

16 kDa heat shock protein B (ID:c4606)

2-ketobutyrate formate-lyase (EC 2.3.1.-) @ Pyruvate formate-lyase (EC 2.3.1.54) (ID:Z4466)

2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor (ID:SL1344_3638)

3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase (EC 2.3.1.245) (ID:SL1344_4027)

3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (ID:S0967)

3'-to-5' exoribonuclease RNase R (ID:S4602)

4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) (ID:STM474_3165)

5-hydroxyisourate hydrolase (EC 3.5.2.17) (ID:Z3062)

ABC transporter ATP-binding protein YddA (ID:Z2212)

ABC transporter protein IroC (ID:APECO1_O1CoBM140)

Aerobactin siderophore receptor IutA @ TonB-dependent siderophore receptor (ID:APECO1_O1CoBM168)

Aerobactin synthase (EC 6.3.2.39), aerobactin biosynthesis protein IucC (ID:APECO1_O1CoBM170)

Ankyrin-repeat protein A (ID:Z5608)

Arylsulfatase (EC 3.1.6.1) (ID:c4719)

Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ID:STM14_4260)

ATP-dependent helicase HrpA (ID:Z2313)

BarA-associated response regulator UvrY (= GacA = SirA) (ID:SL1344_1877)

Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ID:Z4283)

Capsular polysaccharide export system protein KpsC (ID:c3690)

Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (ID:Z0038)

Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) (ID:Z0037)

Carbon starvation protein A (ID:SL1344_0588)

CFA/I fimbrial major subunit (ID:Z0360)

Chaperone protein FimC (ID:c5395)

Chaperone protein HscC (ID:STM474_0680)

Chorismate synthase (EC 4.2.3.5) (ID:t0480)

Cobalamin synthase (EC 2.7.8.26) (ID:SG2041)

Colanic acid biosynthesis glycosyl transferase WcaE (ID:c2581)

Copper/silver efflux RND transporter, outer membrane protein CusC (ID:CE10_0570)

Curli production assembly/transport component CsgE (ID:STM1141)

Curli production assembly/transport component CsgF (ID:SL1344_1077)

Curli production assembly/transport component CsgG (ID:STM14_1303)

Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) (ID:SL1344_0436)

Cytotoxic necrotizing factor (ID:UTI89_C4921)

D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (ID:Z4251)

D-sedoheptulose 7-phosphate isomerase (EC 5.3.1.28) (ID:SL1344_0306)

D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) (ID:b3137)

Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1 (ID:SL1344_0209)

Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) (ID:c1081)

Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) @ Dipeptide chemoreceptor (ID:c4361)

DNA polymerase IV (EC 2.7.7.7) (ID:SL1344_0309)

DNA-binding transcriptional dual regulator SoxS (ID:STM14_5127)

DTDP-4-amino-4,6-dideoxygalactose transaminase (EC 2.6.1.59) (ID:c4711)

Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (ID:Z4136)

Exonuclease SbcD (ID:STM474_0413)

Ferric siderophore receptor, TonB dependent (ID:c2518)

FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) (ID:SL1344_0257)

Fimbrin-like protein FimI (ID:c5394)

FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) (ID:STM3453)

FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) (ID:STM474_3621)

Formate efflux transporter FocA (ID:SL1344_0911)

Galactose/methyl galactoside ABC transporter, ATP-binding protein MglA (EC 3.6.3.17) (ID:Z3404)

Gluconokinase (EC 2.7.1.12) (ID:SL1344_4415)

Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) (ID:SL1344_2072)

Glycosyltransferase IroB (ID:APECO1_O1CoBM141)

GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2) (ID:S2725)

GTP-binding and nucleic acid-binding protein YchF (ID:c1661)

H repeat-associated protein, YhhI family (ID:Z0275)

Hha toxicity modulator TomB (ID:STM474_0494)

Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) (ID:SL1344_1828)

Homoserine O-succinyltransferase (EC 2.3.1.46) (ID:SL1344_4117)

HtrA protease/chaperone protein (ID:SF285071_0233)

Hybrid sensory histidine kinase in two-component regulatory system with EvgA (ID:Z3632)

Hydroxypyruvate isomerase (EC 5.3.1.22) (ID:SL1344_0511)

Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I (ID:SG2866)

IncF plasmid conjugative transfer surface exclusion protein TraT (ID:EC042_pAA071)

Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain (ID:S2726)

Invasion protein IbeA (ID:APECO1_2093)

L-lysine 6-monooxygenase [NADPH] (EC 1.14.13.59), aerobactin biosynthesis protein IucD @ Siderophore biosynthesis protein, monooxygenase (ID:SF3718)

Lipid A biosynthesis myristoyltransferase (EC 2.3.1.243) (ID:SFK218_2097)

Lipid A phosphoethanolamine transferase EptA/PmrC (EC 2.7.8.43) (ID:SL1344_4230)

Lipopolysaccharide core heptose(I) kinase RfaP (ID:STM14_4482)

Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (ID:SL1344_1747)

Low molecular weight protein-tyrosine-phosphatase (EC 3.1.3.48) => Etp (ID:BWG_0834)

Low-affinity inorganic phosphate transporter (ID:Z4341)

Lysine/cadaverine antiporter membrane protein CadB (ID:STM474_2663)

Maltodextrin ABC transporter, ATP-binding protein MsmX (ID:Z2463)

Manganese ABC transporter, ATP-binding protein SitB (ID:c1599)

Manganese ABC transporter, periplasmic-binding protein SitA (ID:SF1365)

Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) (ID:SL1344_3451)

Minor curlin subunit CsgB, nucleation component of curlin monomers (ID:SL1344_1080)

Monothiol glutaredoxin GrxD (ID:E2348C_1740)

Multidrug efflux pump MdfA/Cmr (of MFS type), broad spectrum (ID:STM14_1016)

Murein peptide ABC transporter, substrate-binding protein (requires DppBCDF) (ID:c1803)

N-(3-oxohexanoyl)-L-homoserine lactone-binding transcriptional activator @ N-(3-oxooctanoyl)-L-homoserine lactone-binding transcriptional activator (ID:Z3004)

N-methyl-L-tryptophan oxidase, SolA (ID:SL1344_1097)

N,N'-diacetylchitobiose-specific 6-phospho-beta-glucosidase (EC 3.2.1.86) (ID:STM474_1321)

N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase (EC 6.3.2.38), aerobactin biosynthesis protein IucA (ID:SFV_3854)

N6-hydroxylysine O-acetyltransferase (EC 2.3.1.102), aerobactin biosynthesis protein IucB @ Siderophore synthetase small component, acetyltransferase (ID:APECO1_O1CoBM171)

Na+/H+-dicarboxylate symporter (ID:Z4942)

NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1) (ID:SL1344_2164)

NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) (ID:STM2323.S)

O-antigen ligase (ID:c4448)

Outer membrane porin OmpC (ID:SF2299)

Outer membrane porin OmpF (ID:c1071)

Outer membrane protein A precursor (ID:b0957)

Outer membrane protein A precursor (ID:c1093)

Outer Membrane Siderophore Receptor IroN (ID:APECO1_O1CoBM137)

Outer Membrane Siderophore Receptor IroN (ID:SDY_1022)

Outer membrane usher protein FimD (ID:c5396)

Outer membrane usher protein FimD (ID:HMPREF0358_4708)

Outer membrane usher protein FimD (ID:Z2203)

Outer-membrane-phospholipid-binding lipoprotein MlaA (ID:S2559)

Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34) (ID:SL1344_0566)

Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) (ID:SL1344_3870)

Per-activated serine protease autotransporter enterotoxin EspC (ID:c0393)

Per-activated serine protease autotransporter enterotoxin EspC / autotransporter domain, T5aSS type secretion (ID:EC042_4593)

Periplasmic beta-glucosidase (EC 3.2.1.21) (ID:SL1344_2144)

Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8) (ID:SF0050)

Periplasmic chaperone of outer membrane proteins Skp @ Outer membrane protein H precursor (ID:SF2457T_4958)

Periplasmic fimbrial chaperone (ID:c3589)

Periplasmic thiol:disulfide interchange protein DsbA (ID:SFV_3641)

Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (ID:c1633)

Phosphate transport system regulatory protein PhoU (ID:c4648)

Phosphatidate cytidylyltransferase (EC 2.7.7.41) (ID:Z2318)

Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue (ID:c4914)

Phosphomannomutase (EC 5.4.2.8) => Colanic acid (ID:c2557)

Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (ID:STM14_5016)

Probable 9-O-acetyl-N-acetylneuraminic acid deacetylase (ID:Z5905)

Probable endopeptidase NlpC (ID:SL1344_1277)

Protein FimF (regulates length and adhesion of type 1 fimbriae) (ID:c5397)

Protein FimG (regulates length and adhesion of type 1 fimbriae) (ID:c5399)

Protein MtfA (ID:STM474_2081)

Protein RhsA (ID:Z5014)

PTS system, galactitol-specific IIC component (ID:b2092)

PTS system, galactosamine-specific IIB component (ID:b3138)

PTS system, galactosamine-specific IIC component (ID:b3139)

PTS system, N,N'-diacetylchitobiose-specific IIB component (EC 2.7.1.196) (ID:SL1344_1247)

Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) (ID:STM474_0956)

Respiratory nitrate reductase alpha chain (EC 1.7.99.4) (ID:b1224)

RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein (ID:SL1344_1478)

RNA polymerase sigma factor RpoS (ID:SEN2763)

RNA polymerase-binding transcription factor DksA (ID:S0140)

SbmA protein (ID:c0482)

Sensor histidine kinase PhoQ (EC 2.7.13.3) (ID:STM14_1408)

Signal transduction histidine-protein kinase BarA (EC 2.7.13.3) (ID:SL1344_2939)

Spermidine export protein MdtJ (ID:SL1344_1412)

Stress response diiron-containing protein YciF (ID:STM474_1746)

Stringent starvation protein A (ID:STM14_4033)

Superoxide dismutase [Fe] (EC 1.15.1.1) (ID:SFV_1678)

T1SS secreted agglutinin RTX (ID:Z0609)

Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144) (ID:b2095)

Thioredoxin 2 (ID:Z3867)

Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) (ID:c3566)

Threonine catabolic operon transcriptional activator TdcA (ID:SL1344_3217)

Threonine-rich inner membrane protein GfcA (ID:BWG_0839)

TonB-dependent hemin, ferrichrome receptor (ID:SDY_3554)

TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D (ID:STM14_0682)

TonB-ExbBD energy transducing system, TonB subunit (ID:Sd1012_3335)

Transketolase (EC 2.2.1.1) (ID:c3520)

Translation initiation factor SUI1-related protein (ID:SL1344_1638)

Tricarboxylate transport transcriptional regulator TctD => Citrate response regulator CitB (ID:STM474_0647)

Trilactone hydrolase IroD (ID:APECO1_O1CoBM139)

Trk potassium uptake system protein TrkA (ID:Z4660)

Tryptophan synthase beta chain (EC 4.2.1.20) (ID:Z2550)

Type 1 fimbrae adaptor subunit FimG (ID:Z2205)

Type 1 fimbriae regulatory protein FimB (ID:c5391)

Type 1 fimbriae regulatory protein FimE (ID:c5392)

Type IV pilin PilA (ID:Z0118)

Type-1 fimbrial protein, A chain (ID:Z5912)

Tyrosine-protein kinase (EC 2.7.10.2) (ID:BWG_0833)

UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191) (ID:STM0226)

UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase WaaW (EC 2.4.1.-) (ID:c4450)

UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (ID:SL1344_2057)

UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (ID:SEN3544)

UDP-glucuronate:LPS(HepIII) glycosyltransferase WaaH (ID:Z5042)

Uncharacterized ferredoxin-like protein YdhY (ID:Z2702)

Uncharacterized ferredoxin-like protein YfhL (ID:SL1344_2538)

Uncharacterized glycosyltransferase YcjM (ID:c1780)

Uncharacterized HTH-type transcriptional regulator YfhH (ID:Z3841)

Uncharacterized lipoprotein GfcD (ID:BWG_0836)

Uncharacterized lipoprotein YdeK (ID:Z2195)

Uncharacterized lipoprotein YmcC precursor (ID:BWG_0838)

Uncharacterized outer membrane protein YpjA (ID:Z3948)

Uncharacterized protease YegQ (ID:SL1344_2112)

Uncharacterized protein clustered with Type I restriction-modification system (ID:SL1344_3720)

Uncharacterized protein GfcC (ID:BWG_0837)

Uncharacterized protein YaiT (ID:STM474_0388)

Uncharacterized protein YaiT (ID:Z0469)

Uncharacterized protein YfjI (ID:Z1126)

Uncharacterized protein YgeP (ID:Z4200)

Uncharacterized protein YhiJ (ID:Z4887)

Uncharacterized protein YjaG (ID:SL1344_4108)

Uncharacterized protein YjcF (ID:Z5665)

Uncharacterized protein YjeJ (ID:Z5750)

Uncharacterized protein YneK (ID:Z2176)

Uncharacterized protein YpjB (ID:Z3950)

Uncharacterized protein, YdfU family (ID:Z2056)

Uncharacterized transporter YfdV (ID:Z3635)

Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) (ID:S3902)

Universal stress protein F (ID:STM474_1664)

UPF0118 inner membrane protein YdiK (ID:SL1344_1298)

UPF0187 protein YneE (ID:STM474_1538)

Ureidoglycolate dehydrogenase (EC 1.1.1.154) (ID:SL1344_0521)

UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:S1322)

UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (ID:SL1344_2075)

Zinc ABC transporter, ATP-binding protein ZnuC (ID:STM14_2301)

Zinc ABC transporter, permease protein ZnuB (ID:STM14_2302)

Zinc ABC transporter, substrate-binding protein ZnuA (ID:STM14_2300)

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Secondary metabolite

Non-ribosomal peptide synthetase (NRPS)

Other secondary metabolites

Siderophore

Type-I polyketide synthetase (PKS)

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Downloads

MATLAB species model file: msp_0005.mat