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[Clostridium] clostridioforme 2

Taxonomy

Species:[Clostridium] clostridioforme 2
Genus:Lachnoclostridium
Family:Lachnospiraceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Disease Association:

Crohn's disease (ES=0.618771)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00030 - Pentose phosphate pathway

ko00040 - Pentose and glucuronate interconversions

ko00052 - Galactose metabolism

ko00061 - Fatty acid biosynthesis

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00500 - Starch and sucrose metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00660 - C5-Branched dibasic acid metabolism

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00770 - Pantothenate and CoA biosynthesis

ko00785 - Lipoic acid metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko03430 - Mismatch repair

Show all

KEGG modules

M00004 - Pentose phosphate pathway (Pentose phosphate cycle)

M00006 - Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00015 - Proline biosynthesis, glutamate => proline

M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00061 - D-Glucuronate degradation

M00086 - beta-Oxidation, acyl-CoA synthesis

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00122 - Cobalamin biosynthesis, cobinamide => cobalamin

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00345 - Formaldehyde assimilation, ribulose monophosphate pathway

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00565 - Trehalose biosynthesis, D-glucose 1P => trehalose

M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

M00627 - beta-Lactam resistance, Bla system

M00631 - D-Galacturonate degradation (bacteria)

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

Show all

Antibiotic resistance

blab3

dfrA

erm

qnr

tetM

van

Virulence factor class

Undetected

Show all

Virulence factor gene

Undetected

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Secondary metabolite

Undetected

Show all

Downloads

MATLAB species model file: msp_0135.mat