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[Clostridium] sp. CAG:138

Taxonomy

Species:[Clostridium] sp. CAG:138
Genus:unclassified Christensenellaceae-Catabacteriaceae
Family:Christensenellaceae-Catabacteriaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Disease Association:

Colorectal cancer (ES=0.361402)

Region Enrichment:Mixed
(Denmark, Mongolia, Peru, Sweden, United Republic of Tanzania)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00020 - Citrate cycle (TCA cycle)

ko00240 - Pyrimidine metabolism

ko00260 - Glycine, serine and threonine metabolism

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00472 - D-Arginine and D-ornithine metabolism

ko00473 - D-Alanine metabolism

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00785 - Lipoic acid metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00003 - Gluconeogenesis, oxaloacetate => fructose-6P

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00020 - Serine biosynthesis, glycerate-3P => serine

M00045 - Histidine degradation, histidine => N-formiminoglutamate => glutamate

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00086 - beta-Oxidation, acyl-CoA synthesis

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00627 - beta-Lactam resistance, Bla system

M00705 - Multidrug resistance, efflux pump MepA

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Antibiotic resistance

aac6

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_0144.mat