GEOGRAPHY SPECIES DISEASES ABOUT DOWNLOADS

unclassified Ruminococcaceae

Taxonomy

Species:unclassified Ruminococcaceae
Genus:unclassified Ruminococcaceae
Family:Ruminococcaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Gut outflow:0.32
Disease Association:

Type 1 diabetes (ES=0.770063)

Region Enrichment:Westernized
(Austria, Denmark, France, Germany, Italy, Japan, Luxembourg, Sweden, United Kingdom)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00030 - Pentose phosphate pathway

ko00240 - Pyrimidine metabolism

ko00250 - Alanine, aspartate and glutamate metabolism

ko00300 - Lysine biosynthesis

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00520 - Amino sugar and nucleotide sugar metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko03030 - DNA replication

ko03060 - Protein export

ko03410 - Base excision repair

ko03430 - Mismatch repair

ko03440 - Homologous recombination

Show all

KEGG modules

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00015 - Proline biosynthesis, glutamate => proline

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00140 - C1-unit interconversion, prokaryotes

M00159 - V-type ATPase, prokaryotes

M00308 - Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00627 - beta-Lactam resistance, Bla system

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00652 - Vancomycin resistance, D-Ala-D-Ser type

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

Show all

Antibiotic resistance

tetM

Virulence factor class

Undetected

Show all

Virulence factor gene

Undetected

Show all

Secondary metabolite

Undetected

Show all

Downloads

MATLAB species model file: msp_0565.mat