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Firmicutes bacterium CAG:103

Taxonomy

Species:Firmicutes bacterium CAG:103
Genus:unclassified Clostridiales 5
Family:unclassified Clostridiales 5
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Region Enrichment:Mongolia

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00010 - Glycolysis / Gluconeogenesis

ko00020 - Citrate cycle (TCA cycle)

ko00121 - Secondary bile acid biosynthesis

ko00240 - Pyrimidine metabolism

ko00250 - Alanine, aspartate and glutamate metabolism

ko00300 - Lysine biosynthesis

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00511 - Other glycan degradation

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00015 - Proline biosynthesis, glutamate => proline

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00086 - beta-Oxidation, acyl-CoA synthesis

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00159 - V-type ATPase, prokaryotes

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

M00844 - Arginine biosynthesis, ornithine => arginine

M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine

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Antibiotic resistance

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_0654.mat