GEOGRAPHY SPECIES DISEASES ABOUT DOWNLOADS

Campylobacter concisus 2

Taxonomy

Image of organism in genus Campylobacter concisus 2
Species:Campylobacter concisus 2
Genus:Campylobacter
Family:Campylobacteraceae
Order:Campylobacterales
Class:Epsilonproteobacteria
Phylum:Proteobacteria

 

Disease Association:

Liver cirrhosis (ES=1)

Liver cirrhosis (ES=0.439446)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00020 - Citrate cycle (TCA cycle)

ko00061 - Fatty acid biosynthesis

ko00250 - Alanine, aspartate and glutamate metabolism

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00340 - Histidine metabolism

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00540 - Lipopolysaccharide biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00620 - Pyruvate metabolism

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00720 - Carbon fixation pathways in prokaryotes

ko00730 - Thiamine metabolism

ko00770 - Pantothenate and CoA biosynthesis

ko00780 - Biotin metabolism

ko00790 - Folate biosynthesis

ko00970 - Aminoacyl-tRNA biosynthesis

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03070 - Bacterial secretion system

ko03410 - Base excision repair

ko03430 - Mismatch repair

ko03440 - Homologous recombination

Show all

KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00026 - Histidine biosynthesis, PRPP => histidine

M00049 - Adenine ribonucleotide biosynthesis, IMP => ADP,ATP

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00053 - Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP

M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A

M00063 - CMP-KDO biosynthesis

M00064 - ADP-L-glycero-D-manno-heptose biosynthesis

M00086 - beta-Oxidation, acyl-CoA synthesis

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate

M00121 - Heme biosynthesis, glutamate => heme

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00144 - NADH

M00149 - Succinate dehydrogenase, prokaryotes

M00150 - Fumarate reductase, prokaryotes

M00153 - Cytochrome bd ubiquinol oxidase

M00156 - Cytochrome c oxidase, cbb3-type

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00346 - Formaldehyde assimilation, serine pathway

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

M00572 - Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00620 - Incomplete reductive citrate cycle, acetyl-CoA => oxoglutarate

M00705 - Multidrug resistance, efflux pump MepA

M00718 - Multidrug resistance, efflux pump MexAB-OprM

M00843 - L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4

M00844 - Arginine biosynthesis, ornithine => arginine

Show all

Antibiotic resistance

Undetected

Virulence factor class

Undetected

Show all

Virulence factor gene

Undetected

Show all

Secondary metabolite

Aryl Polyene

Show all

Downloads

MATLAB species model file: msp_0844c.mat