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unclassified Ruminococcaceae

Taxonomy

Species:unclassified Ruminococcaceae
Genus:unclassified Ruminococcaceae
Family:Ruminococcaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Disease Association:

Crohn's disease (ES=0.360872)

Region Enrichment:European
(Austria, Germany, Italy, Luxembourg, Sweden)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00052 - Galactose metabolism

ko00250 - Alanine, aspartate and glutamate metabolism

ko00300 - Lysine biosynthesis

ko00440 - Phosphonate and phosphinate metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00511 - Other glycan degradation

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00620 - Pyruvate metabolism

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko03060 - Protein export

ko03430 - Mismatch repair

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00016 - Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00133 - Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine

M00140 - C1-unit interconversion, prokaryotes

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00159 - V-type ATPase, prokaryotes

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

M00844 - Arginine biosynthesis, ornithine => arginine

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Antibiotic resistance

aph

sul

tetM

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_1013.mat