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unclassified Agathobaculum

Taxonomy

Species:unclassified Agathobaculum
Genus:Agathobaculum
Family:unclassified Clostridiales 5
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Gut outflow:0.444
Region Enrichment:Non-westernized
(Fiji, Madagascar, Mongolia)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00061 - Fatty acid biosynthesis

ko00250 - Alanine, aspartate and glutamate metabolism

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00730 - Thiamine metabolism

ko00770 - Pantothenate and CoA biosynthesis

ko00970 - Aminoacyl-tRNA biosynthesis

ko02030 - Bacterial chemotaxis

ko02040 - Flagellar assembly

ko03030 - DNA replication

ko03060 - Protein export

ko03410 - Base excision repair

ko03430 - Mismatch repair

ko03440 - Homologous recombination

Show all

KEGG modules

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00015 - Proline biosynthesis, glutamate => proline

M00017 - Methionine biosynthesis, apartate => homoserine => methionine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00086 - beta-Oxidation, acyl-CoA synthesis

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate

M00122 - Cobalamin biosynthesis, cobinamide => cobalamin

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00565 - Trehalose biosynthesis, D-glucose 1P => trehalose

M00627 - beta-Lactam resistance, Bla system

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

M00844 - Arginine biosynthesis, ornithine => arginine

M00845 - Arginine biosynthesis, glutamate => acetylcitrulline => arginine

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Antibiotic resistance

tetM

van

Virulence factor class

Undetected

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Virulence factor gene

Undetected

Show all

Secondary metabolite

Undetected

Show all

Downloads

MATLAB species model file: msp_1128.mat