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Megasphaera micronuciformis

Taxonomy

Image of organism in genus Megasphaera micronuciformis
Species:Megasphaera micronuciformis
Genus:Megasphaera
Family:Veillonellaceae
Order:Veillonellales
Class:Negativicutes
Phylum:Firmicutes

 

Disease Association:

Crohn's disease (ES=1)

Liver cirrhosis (ES=1)

Liver cirrhosis (ES=1)

Region Enrichment:Japan

Phenotypes

ShapeCoccus-shaped
Gram stainingGram+; Gram-
MotilityNonmotile
SporulationNonsporulating
EcosystemHuman
Ecosystem TypeRespiratory system

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00072 - Synthesis and degradation of ketone bodies

ko00240 - Pyrimidine metabolism

ko00250 - Alanine, aspartate and glutamate metabolism

ko00270 - Cysteine and methionine metabolism

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00400 - Phenylalanine, tyrosine and tryptophan biosynthesis

ko00450 - Selenocompound metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00540 - Lipopolysaccharide biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00710 - Carbon fixation in photosynthetic organisms

ko00730 - Thiamine metabolism

ko00770 - Pantothenate and CoA biosynthesis

ko00780 - Biotin metabolism

ko00790 - Folate biosynthesis

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko03010 - Ribosome

ko03030 - DNA replication

ko03060 - Protein export

ko03070 - Bacterial secretion system

ko03410 - Base excision repair

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00010 - Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00023 - Tryptophan biosynthesis, chorismate => tryptophan

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00060 - Lipopolysaccharide biosynthesis, KDO2-lipid A

M00063 - CMP-KDO biosynthesis

M00064 - ADP-L-glycero-D-manno-heptose biosynthesis

M00086 - beta-Oxidation, acyl-CoA synthesis

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00122 - Cobalamin biosynthesis, cobinamide => cobalamin

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00149 - Succinate dehydrogenase, prokaryotes

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00525 - Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine

M00526 - Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00549 - Nucleotide sugar biosynthesis, glucose => UDP-glucose

M00570 - Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00627 - beta-Lactam resistance, Bla system

M00642 - Multidrug resistance, efflux pump MexJK-OprM

M00705 - Multidrug resistance, efflux pump MepA

M00840 - Tetrahydrofolate biosynthesis, mediated by ribA and trpF, GTP => THF

M00843 - L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4

M00844 - Arginine biosynthesis, ornithine => arginine

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Cazyme

Antibiotic resistance

tetM

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_1325.mat