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unclassified Clostridium

Taxonomy

Image of organism in genus unclassified Clostridium
Species:unclassified Clostridium
Genus:Clostridium
Family:Clostridiaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Region Enrichment:Mixed
(Fiji, Madagascar, Peru, Sweden, Thailand, United Republic of Tanzania)

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00061 - Fatty acid biosynthesis

ko00250 - Alanine, aspartate and glutamate metabolism

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00300 - Lysine biosynthesis

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00620 - Pyruvate metabolism

ko00670 - One carbon pool by folate

ko00730 - Thiamine metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko03430 - Mismatch repair

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KEGG modules

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00015 - Proline biosynthesis, glutamate => proline

M00061 - D-Glucuronate degradation

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00127 - Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P

M00140 - C1-unit interconversion, prokaryotes

M00159 - V-type ATPase, prokaryotes

M00527 - Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00609 - Cysteine biosynthesis, methionine => cysteine

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

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Antibiotic resistance

Undetected

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_1353.mat