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unclassified Clostridium

Taxonomy

Image of organism in genus unclassified Clostridium
Species:unclassified Clostridium
Genus:Clostridium
Family:Clostridiaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Gut outflow:1
Region Enrichment:United Republic of Tanzania

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00250 - Alanine, aspartate and glutamate metabolism

ko00290 - Valine, leucine and isoleucine biosynthesis

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00550 - Peptidoglycan biosynthesis

ko00670 - One carbon pool by folate

ko00770 - Pantothenate and CoA biosynthesis

ko03430 - Mismatch repair

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KEGG modules

M00007 - Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P

M00015 - Proline biosynthesis, glutamate => proline

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00019 - Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00061 - D-Glucuronate degradation

M00119 - Pantothenate biosynthesis, valine/L-aspartate => pantothenate

M00134 - Polyamine biosynthesis, arginine => ornithine => putrescine

M00432 - Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate

M00535 - Isoleucine biosynthesis, pyruvate => 2-oxobutanoate

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

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Antibiotic resistance

Undetected

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_1601.mat