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unclassified Ruminococcaceae

Taxonomy

Species:unclassified Ruminococcaceae
Genus:unclassified Ruminococcaceae
Family:Ruminococcaceae
Order:Clostridiales
Class:Clostridia
Phylum:Firmicutes

 

Region Enrichment:Peru

Phenotypes

Abundance overview

Healthy

Mean
Median
Industrialization
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Disease

Mean
Median
Alphabetical

Presence
Abundance
Without outliers
log Abundance


Function overview

KEGG pathways

In the linked pathways:
red=enriched, blue=depleted

ko00250 - Alanine, aspartate and glutamate metabolism

ko00471 - D-Glutamine and D-glutamate metabolism

ko00473 - D-Alanine metabolism

ko00511 - Other glycan degradation

ko00521 - Streptomycin biosynthesis

ko00550 - Peptidoglycan biosynthesis

ko00730 - Thiamine metabolism

ko00970 - Aminoacyl-tRNA biosynthesis

ko00983 - Drug metabolism - other enzymes

ko03010 - Ribosome

ko03060 - Protein export

ko03430 - Mismatch repair

ko03440 - Homologous recombination

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KEGG modules

M00002 - Glycolysis, core module involving three-carbon compounds

M00005 - PRPP biosynthesis, ribose 5P => PRPP

M00015 - Proline biosynthesis, glutamate => proline

M00018 - Threonine biosynthesis, aspartate => homoserine => threonine

M00020 - Serine biosynthesis, glycerate-3P => serine

M00021 - Cysteine biosynthesis, serine => cysteine

M00050 - Guanine ribonucleotide biosynthesis IMP => GDP,GTP

M00061 - D-Glucuronate degradation

M00093 - Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE

M00096 - C5 isoprenoid biosynthesis, non-mevalonate pathway

M00157 - F-type ATPase, prokaryotes and chloroplasts

M00554 - Nucleotide sugar biosynthesis, galactose => UDP-galactose

M00579 - Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate

M00631 - D-Galacturonate degradation (bacteria)

M00632 - Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P

M00705 - Multidrug resistance, efflux pump MepA

M00793 - dTDP-L-rhamnose biosynthesis

M00844 - Arginine biosynthesis, ornithine => arginine

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Antibiotic resistance

Undetected

Virulence factor class

Undetected

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Virulence factor gene

Undetected

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Secondary metabolite

Undetected

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Downloads

MATLAB species model file: msp_2009.mat